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Table 4 Association between common variants and 5 PCs

From: Targeted sequencing of NOTCH signaling pathway genes and association analysis of variants correlated with mandibular prognathism

Trait SNP A1/A2 Gene Fun Beta SE P
PC1 rs1051415 C/T JAG1 Exon/syn -0.7298 0.1986 0.0003608
PC1 rs7104987 A/G MAML2 UTR3 0.2938 0.1219 0.0175
PC1 rs8383 C/AGT PSEN2 Intronic 0.2925 0.1303 0.02666
PC1 rs7930268 T/CG MAML2 UTR3 0.2802 0.1254 0.02742
PC1 rs2304214 C/GT DLL3 Exon/syn -0.4739 0.2129 0.02793
PC1 rs2304223 C/G DLL3 Intronic -0.4739 0.2129 0.02793
PC2 rs1044009 G/AC NOTCH3 Exon/nonsyn -0.2354 0.1136 0.0404
PC2 rs741859 C/T JAG2 UTR3 -0.3261 0.1231 0.009212
PC2 rs957578869 G/T JAG2 UTR3 0.4257 0.1489 0.005034
PC2 rs1177358515 G/T EP300 Intronic 0.4909 0.1887 0.01049
PC2 rs10149229 A/CG JAG2 Intronic -0.3172 0.1222 0.01068
PC2 rs2272591 A/GT JAG2 Intronic -0.3083 0.1211 0.01223
PC2 rs6705408 C/T ADAM17 UTR3 -0.4671 0.1949 0.01812
PC2 rs2274185 C/G NCSTN Intronic -0.3322 0.156 0.03528
PC2 rs1106317 A/GT NCOR2 Intronic 0.2442 0.1159 0.03726
PC2 rs9972231 C/AGT JAG2 Intronic 0.3294 0.1565 0.03748
PC2 rs117649295 G/A LFNG UTR3 -0.4966 0.2413 0.04184
PC2 rs28386899 G/A RFNG UTR5 0.3577 0.1753 0.04354
PC3 rs165935 C/T PSEN1 UTR3 -0.3067 0.1388 0.02915
PC3 rs6563 A/CG NOTCH1 UTR3 0.3215 0.1519 0.03641
PC3 rs1055834488 G/AC JAG1 UTR5 -0.3348 0.1637 0.04304
PC3 rs10423702 T/C NOTCH3 Intronic 0.3721 0.1822 0.0434
PC3 rs1044009 G/AC NOTCH3 Exon/nonsyn 0.3327 0.1496 0.02802
PC3 rs1043996 G/A NOTCH3 Exon/syn 0.3543 0.1314 0.008049
PC3 rs915894 T/G NOTCH4 Exon/nonsyn 0.3462 0.1313 0.009514
PC4 rs1033583 T/G DLL1 UTR3 -0.4583 0.1541 0.003572
PC4 rs2272591 [ A/GT JAG2 Intronic -0.3459 0.1345 0.01134
PC4 rs3734776 C/T DLL1 Intronic -0.3278 0.1281 0.01176
PC4 rs3741513 T/A NCOR2 Exon/syn -0.4064 0.1646 0.01499
PC4 rs3134942 G/T NOTCH4 Exon/syn -0.7543 0.3105 0.01664
PC4 rs3134930 C/T NOTCH4 Intronic -0.2993 0.1259 0.01907
PC4 rs741859 C/T JAG2 UTR3 -0.321 0.1376 0.02139
PC4 rs1044507 A/C NOTCH4 Exon/syn -0.7504 0.3249 0.02266
PC4 rs7931870 A/G MAML2 Exon/syn -0.3707 0.1676 0.02891
PC4 rs2243396 C/GT DTX1 Intronic -0.3267 0.149 0.03034
PC4 rs3134798 G/ACT NOTCH4 Intronic 0.4612 0.2113 0.03109
PC4 rs114763 C/GT SNW1 Exon/syn -0.2856 0.1331 0.03401
PC4 rs422951 T/C NOTCH4 Exon/nonsyn -0.423 0.1976 0.03435
PC4 rs443198 A/GT NOTCH4 Exon/syn 0.2815 0.1332 0.03666
PC4 rs3823301 C/T DLL1 UTR5 -0.3524 0.127 0.006446
PC4 rs10149229 A/G JAG2 Exon/syn -0.3708 0.1353 0.007108
PC4 rs915894 T/G NOTCH4 Exon/nonsyn 0.2567 0.1277 0.04663
PC5 rs79129905 G/A LFNG UTR3 -0.4519 0.1827 0.01481
PC5 rs5758235 T/C EP300 Intronic -0.3857 0.1426 0.007857
PC5 rs753573114 C/AT EP300 Intronic -0.4273 0.1431 0.003452
PC5 rs3818120 G/A EP300 intronic -0.3576 0.1395 0.01162
PC5 rs20552 T/ACG EP300 Exon/syn 0.3761 0.1474 0.01203
PC5 rs17002316 T/C EP300 intronic -0.3857 0.1426 0.007857